NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256407_10000845

Scaffold Ga0256407_10000845


Overview

Basic Information
Taxon OID3300028886 Open in IMG/M
Scaffold IDGa0256407_10000845 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69079
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (95.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041054Metagenome / Metatranscriptome160Y
F052997Metagenome / Metatranscriptome141Y
F084920Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0256407_1000084554F084920AGGAGMDNEFGMQELYSVQLKSTYPIEIKGVQYAAGEVVAAFDKIQIANFQEINKEIAAQGGYQNKKLVIWDRTEGVNLIFTQGVFSKTQLGLMHNARVLSINEGKRIRIAQRDELETDDEGKITLTHVPIDSWIFVYNRETGEKLTDLTWVDKTQGILQTPLIYKEVVVDYEYGYDNGADVELIGEEIFDGFLTLEGRSRIKDDITGETHTAIIYIPKLKITSDFNLTLGQNAQPIVGQFKGTALSVGGRKTSKALEIYYLDEDIDRDSEWR
Ga0256407_1000084557F041054AGGAGGMNVRNCTDIGINAQYIVKRLLANQNLLKLLYYTDKDPLSHDDLTQEQIQDEIFEKLVKIVPRVGPKETAHSIIAVRIARARGLASNNEFKNVNISIEVFVPMTQWIIKDTNLRPFAIMGEVQKSLNGKKIEGLGKLTGGDFSLNFLTEEISAYEQTFVLTSYD
Ga0256407_1000084558F052997GGAGGMGYYEDVYLKRLNHYGVDWQSRIQGQREENFRRQLMKSVYYVEFEYEGVMREGELTPMRQNETKTMHYLLTDVHLDMPNGTILFIPDKDNILCPWLIYYLEDIKASGYNRYIVLKMTHYLTWKNRQGKKCSTWAYFYGQEDNMLKDELKSRSRSKVLYTENLKLSFFIIPLNENIRKDDYLEVTQGKLTEAYVVTGYDIQSTPGVEFVSVDPQYIRDNSEPPVQDDDDNADDFYWLNRGGEA

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