Scaffold Ga0256407_10000012

Overview

Basic Information

• Taxon OID: 3300028886
• Scaffold ID: Ga0256407_10000012
• Source Dataset Name: Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 401138
• Total Scaffold Genes: 505
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (14.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y
F042680	Metagenome / Metatranscriptome	157	Y
F051619	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256407_10000012184	F051619	AGTAG	MSDNVINWEQVRIDASINIMNAILSNSIMVFILQFLFKKQISDIAVKYADKLIEELKK
Ga0256407_10000012282	F042680	N/A	MVVQDIKPLVKGIAQLQYVLAGGIAVYKIIAVDGTEYQLEIDVSNKNDVGASASFNTTEKALLLMRWIRKANENDTLIKIKG
Ga0256407_1000001248	F028722	N/A	MATFENGQSCLEKRGIDERSNEINKSDYNELRPYGPTHKDALSDGDPQGKGTGHGGHNAWQPDCTKPTNMIDYSNFDTFNGGGSYDINGRNDVGGREKSIRSSKYNYENQYGADLINTAENIAQGQYYIGQTIKHL