Scaffold Ga0256407_10000007

Overview

Basic Information

• Taxon OID: 3300028886
• Scaffold ID: Ga0256407_10000007
• Source Dataset Name: Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 412184
• Total Scaffold Genes: 597
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 176 (29.48%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027710	Metagenome / Metatranscriptome	193	Y
F028722	Metagenome / Metatranscriptome	190	Y
F042680	Metagenome / Metatranscriptome	157	Y
F051619	Metagenome / Metatranscriptome	143	Y
F057815	Metagenome / Metatranscriptome	135	Y
F063246	Metagenome / Metatranscriptome	129	Y
F072887	Metagenome / Metatranscriptome	121	Y
F082004	Metagenome / Metatranscriptome	113	Y
F102225	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256407_10000007224	F102225	GAG	MDRLFGEEFQKYLWNMHCNGDIFAEYWRPFTYDEWIRNGKPIEDGGVKLDDNTEHLKTFR
Ga0256407_10000007239	F027710	AGAAG	MEKRKLYILIDKSLKPVYGCVQGGHAVAQWMLEHPHSREWQNDYLIYLSADVPKWRKRLKGFGVEYTEFKEPDLDFKTTALAVFGHEELFKRLKVVTED
Ga0256407_10000007274	F042680	N/A	MIVHDIKSIVKGIAQLQYIMSGGIAVYHITSVDDKKYQLEIDLSDKKDVGETAAFKPTEKAILLMRWIRKANENDTLIEIK
Ga0256407_10000007295	F072887	GGA	MRCGHELIIGGNFMLSEINGEILAEEDDAMVTNASCPYCGARYELYDTPQSEKKNYPYWRDNNLEA
Ga0256407_10000007333	F082004	N/A	MILHLNLTEDHLKLVRFLNIEDKDDDVLTINKKVMLTMQTHILDDVAMILGLRDKAIKNTSEDADGSAYPDDVEKYMLDTYHYVSDNLYLIESLLHQRVLEGVQSGHYKAKDSDLIWEIC
Ga0256407_10000007443	F057815	N/A	MAKKIKDSDILKAMAMHLDEDSVVFGANGHYAVGAYYDITKVSSVFGDKDYNSQDTIDAADSTEAATKYRTDDDKMIEGFQKAEWLKEF
Ga0256407_10000007459	F028722	N/A	MANTVQNGQTCLEKRGMEERHQEITRSDYNIENQYSATHQDAVSDGDAQGKGTLHGGHTHFLPDCTKPTSQINYSNFDTENGGGYYDIKGRNGISGRERAMAISIYNKENPYGTNLVDTTKNVDDGQYFVGQQIGQKTTT
Ga0256407_10000007482	F063246	N/A	MAKFKIELNDIQNIRDLLQETYRLADEQIVQAQNEINKLSVSTQLEQEPMDAKSKYAKAINDYLGMKDKAISKKLDIAKILTDVYHHNGDVKGAIENGENIKNMDFNFDDIKKMIDNNMQEEKTKTIELNKK
Ga0256407_10000007590	F051619	N/A	MIIFYMENSTVNWEEVRINAAISVMNSILSSSILLFIFQFVFKRQVADIAVEYADKLIEELKK