Scaffold Ga0307277_10139598

Overview

Basic Information

• Taxon OID: 3300028881
• Scaffold ID: Ga0307277_10139598
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042465	Metagenome / Metatranscriptome	158	Y
F078685	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307277_101395981	F042465	N/A	NSMRALVLTAAVFGCAVAAAQADECDTMTKTVEVMIDKLDPTAKAGNNPAGLCAAYGEGLGLIKSFRIVADECLDEGDPRTQTLAKLDRSIRQLQSQVDKNCE
Ga0307277_101395982	F078685	AGG	MKASTMAAAATVLVAILAAGTPVRADEDCDNVVKALEDAQLVATKTIDQTMDDIKKATGQPADDKKKASVKNTFCSVSGEYLGTTRAFRAVAAECLTGNKKSTTLASLDKSIKEMETAIEGTCK