Scaffold Ga0307277_10000057

Overview

Basic Information

• Taxon OID: 3300028881
• Scaffold ID: Ga0307277_10000057
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32736
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039074	Metagenome	164	Y
F053667	Metagenome	141	Y
F072678	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307277_1000005722	F072678	N/A	MGVFKMLVVLVAALGMAAVESARSAPAKDEDDVALFVGSAHALSAKRANSRRPR
Ga0307277_100000574	F053667	GGAGG	MRKLKTILVASMVAASLYAAAGTAWARSESVHRGTAWTDADDATVLDGPIGVSWELPFAF
Ga0307277_100000576	F039074	AGG	MEDRSAGLAALIARAAQAGDICILLAPSGPLSASGAAFVNRLHADLGGERVEPLHVTVDRVATEDAAALIRSVRDSLGRLRPASIGIDRLYFLPSQSRGPEIVKLEVGPDTVLDEDTNELLAALRRCGLPSLYPDRPKPTITTLQRVTRRDSVDPDVAGLPLELFVADLVIVSRIIGVARYEILDSASIPAGG