Scaffold Ga0307278_10120036

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10120036
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1181
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F030008	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_101200362	F000037	AGG	MEKDYLILKRATASRPSGEWHDDDFDVLADGAVVGRIMKVHAAPVGTPWMWTLAFGHHEDRTPTYGYEATREAAMAAFAKSWRRE
Ga0307278_101200363	F030008	AGG	MSLKQLARQSRMWICPAWHSPTGRARRAILFTALGAAAPLAHAQQLPTIESLSQSYVACVQSAFVHRLDDFAVNGNLPQAIERALLDCQIEENALYTTAVTSGPGHAQAIALVRAAIEQLKANLKSELLATPPTMGRK