Scaffold Ga0307278_10019063

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10019063
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3179
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000145	Metagenome / Metatranscriptome	1927	Y
F000307	Metagenome / Metatranscriptome	1330	Y
F001448	Metagenome / Metatranscriptome	692	Y
F006127	Metagenome / Metatranscriptome	381	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_1001906310	F000307	N/A	MERRRLHDVLADGVVVGRIFNSAAAPMGAPWMWTLAFGQHEDRTPTHGYEATREAAMAAFAKSWRREP
Ga0307278_100190636	F006127	N/A	MFYVVVSIIYAGTILFFLGTAALIVRAWTRRRYPHKSPSDLHYIVISIVLLVSAGIGIMVASQIVEAFRG
Ga0307278_100190638	F000145	AGG	MPAGKNRIMIYGPKSDGTYVIEFRTAAGEALAISIPRGETAVLKHFQERMPYGLFVPDVDRSA
Ga0307278_100190639	F001448	GGCGG	MTKKRRLYPPRIVGGQVMTPADLRRLHKYMLELERADYISDEMRAVVEDLWPDLAHKLPPKKLQSPNAGNCNFPNYWVRDRI