Scaffold Ga0307278_10001458

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10001458
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11768
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000938	Metagenome	827	Y
F002070	Metagenome	596	Y
F044957	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_1000145812	F002070	GGAGG	VTRCRDDQLAAHLRRLGNHALNELLLQLPKPRFAALVELALARPVLPAGLALRFEPTPNADRWTVVACAPRRQLGTLTRHQDPSSRITWRAWTRAGDPVQITGVWWWRRRLDAGVALAWVTPVSGARCLALAAHVRALPGGQLQELLAGLPRDRYDRLLEAAFAPQETAA
Ga0307278_100014586	F000938	AGGAG	VPRRLIWQVDMGDGTWAVCCMACRLPLYRGPKLAAADRVFANHLCEPVVPLGRRRRRR
Ga0307278_100014588	F044957	AGGGGG	VSGRIATYLDRGLGWTKPMVVACCRSCGTELARSTNQATAERTARRSRCPTCGTRVARRLPGTTSPATDLELARGRRALAAGRRWPPDRQPVLRLQRAGRR