Scaffold Ga0307278_10001287

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10001287
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12500
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009714	Metagenome / Metatranscriptome	314	Y
F068402	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_1000128717	F009714	AGG	MKSALFVTIFVIVGGVAILLAFPAEHKRAAIEFRQARAELGVPPQIEDEKIEDDVAVTPEPVDQYSIAHAKPKEQATTSRHRHVAHRRLNFLEKLVVGFINLQKHQRAKTATKRSHTTSRRG
Ga0307278_100012872	F068402	N/A	MAYLFLVRSMRRFLLILLALGIGTLVSAVTATLSYFAFQAGAELISEILFWPNTWMQSLVPLLYGLPNIGTPDHPLYEGTPVNIAVFFVSFPLSILVYSAVAYVFVRRRQYGLQTTQQT