Scaffold Ga0307278_10000637

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10000637
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17373
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000938	Metagenome	827	Y
F002070	Metagenome	596	Y
F015967	Metagenome	250	Y
F023703	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_1000063711	F002070	GGAG	MTHPDPLTAHVRRLGNHELNELLVQLPKPTFAALVEVALARPVLPAGLMVRYEPAPGVDGWAVVACAPRRRLGTLTRDRDRGSQVVWRAWTRAGDPVQISGISSWRRRGDAAAALAWVTPASRARFLALAAHVRGLADPQLHNLLRALPRAVFDQLLDAAYAAEGTAA
Ga0307278_1000063716	F000938	AGGAGG	MARRTIWRIDMGDGTWAVCCMACRIALYRGAKGGADRAAAAHFCEPVIPLGRRRRSA
Ga0307278_1000063717	F015967	AGGAG	VNNRIRWGQPAAGWDAPGWTSLVDHGPLPLQTVRSVGRWLWPTLSVSGFLVVTGFVFGHDDPTPGLSLRGLCTIALAAAVVILLTVRRTAGPGPLTRAVFEYAVVFVLAVLVATTGVALDQAPTAGTRAAVDQRPALVKTIDGFGDWLSQWRDWARKETDRRSPSSATLPDPTGQAMAPSPASPSSTRRQL
Ga0307278_100006372	F023703	GAG	MADRCSFCGSTAGPFNRVGGLFTVLMCADCQAARGHGSGPYPVMTRAEMRAGLDQLPTWVLEQKAAANRHVIAVMRTRLAAGDRVARMYQEPGLAWLERQAEVAEQLISDRQARAKPDS