Scaffold Ga0307278_10000317

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10000317
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24718
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001947	Metagenome / Metatranscriptome	613	Y
F081014	Metagenome / Metatranscriptome	114	N
F088074	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_1000031716	F088074	AGGAG	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRSPMLGFRGLEDLDRVRKERLGPSSP
Ga0307278_100003172	F081014	AGGAG	VGSFTGSSKALPDQPVRTVDPEVERLAHVVVDGLIARLAQEPAVPASSLLDNLAAQLEQAAALHRLGLVRRTPR
Ga0307278_100003173	F001947	GGCGG	VTRRKTRRPGEISIPPGSGFGKAHRCTCWPKPDDARPCTPQTCDWRCRACRIHGRPFYSHGDLQYLEHGTGPLAAELDRLWQAKGTMRGGTAQEERGGAGDGWRALPRGAAGLAPRRPHLRTVTELYYPGLQDPPPGHDGRNAGSGR