Scaffold Ga0307278_10000014

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10000014
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105909
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (65.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015614	Metagenome / Metatranscriptome	253	Y
F025499	Metagenome / Metatranscriptome	201	Y
F071216	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_10000014108	F071216	AGGA	MRRSTRLAVAACAAVVGLAFAGPALAAYSPRLIATSFSNGPGKPTTMLLGHLQEASDDPTAKDTIYAPPGYVVNLTQPVGTKIGEVSATLILRDAGNAQVDVTGEVLADNPALHPSDPCSPGLHQAVWKLNITVAGTPLTVYVYVDSVTAGPEAAFASAKIQLCLAGPIGTPAGAQLLFALFDVNGVFTNPTNTADRIWRATFTPYTPGTPNPNPVGTTEGQALVPGRVSLTLTVKRLKHRVVLLQGRLLVDGSPFRGALVELYTPGKTARAGKATTNRSGRFSIRKKIKKKTRYYAQVVFVADLTGCPAAPLPGVPQGCKTATVSFAVATRTVLARPRR
Ga0307278_1000001461	F025499	AGG	VLEVGRCVPEATVWLAPREPTTIADLVAEAPALFLFFLFAWSST
Ga0307278_1000001497	F015614	GGA	VARRRLFALILALGSLLGIGLYARRGRKQDRVDLYFADGSMVSVEGDSPQAARLIPLARDAIRAARA