Scaffold Ga0307278

Basic Information
Taxon OID	3300028878 Open in IMG/M
Scaffold ID	Ga0307278_10000009 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028878 Open in IMG/M

Scaffold ID

Ga0307278_10000009 Open in IMG/M

Source Dataset Name

Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	121311
Total Scaffold Genes	100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (56.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

121311

Total Scaffold Genes

100 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (56.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Colorado

Coordinates

Lat. (^o)

38.9206

Long. (^o)

-106.9489

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002484	Metagenome / Metatranscriptome	555	Y
F007043	Metagenome / Metatranscriptome	359	Y
F013893	Metagenome / Metatranscriptome	267	Y
F022970	Metagenome / Metatranscriptome	212	Y
F030208	Metagenome	186	Y
F104617	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_1000000919	F022970	GGGGG	MKIQVDPEAREELIEFLRRADCTVQVEDDGSLVVDVPDVVGEDQARLEVDLYLKAWQASHPDVETHLRGIPPSGVEKEAETAD
Ga0307278_1000000934	F013893	AGGAGG	MHHGHRRFHRRSVGHRWYEPQRVLERLEEYQRDLEQELADVADLIARLKKDQPEAVTV
Ga0307278_1000000954	F030208	AGGAGG	MEYRIDREALDEFIGRQVELVESASIPKLLADVVELRLRHESVSRDEVRALWLGAGLATHVGLAIFEEPERFVIAVPSPVTPAAALAA
Ga0307278_1000000962	F104617	GGA	VESDTVNAILEDLTQLSPKRLERRLEQLAREALPCGSAIVFDGSPREGLTVGLRVESEGRRDVLDLARVLEEEPGGQVFSAWALLAPSRGHPSWRLLLRIHFERPVKCSFIVRLDVRDHPSDPLRAALPLILAADRFALAFDGPPEHDRPLVWVYAPAARECVLEVLAAVGIA
Ga0307278_100000097	F007043	N/A	MTSLRPLRFRRRPVTPTVESLNERLCDLTCERQQLRANGADSVALERNRVAIAGTQWELSYALIERYLPQQVAAAAQSAA
Ga0307278_1000000998	F002484	GAG	MARVEFLQDAIRLLVAERQALHERDASRDELEANRLELARRQQQFSHALIDRYLRRAERHAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307278_10000009

Overview

Ecosystem & Geography

Associated Families

Sequences