Scaffold Ga0307278_10000001

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10000001
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 290216
• Total Scaffold Genes: 325
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 200 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017054	Metagenome / Metatranscriptome	243	Y
F030937	Metagenome / Metatranscriptome	184	Y
F072313	Metagenome / Metatranscriptome	121	N
F077125	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_10000001102	F017054	N/A	VNTLTPVERNERRRLRRRQETIRWSIRVLLIALVFSLGVALGQAIQDNPRPGRTVTSERTLHVPTRGQQGSTITP
Ga0307278_10000001174	F030937	AGGA	MGGIDFTFALAVGAFLLASWVDARVGDSRPEAPAKRIGLCLLAVLALQASVGGLYLVQAAGASQAGIMAAVLGLFLPTLIFALLTGLWLLRMLADIVGVARR
Ga0307278_10000001207	F077125	GGAG	MVMNVTDVESLRERIGELVRERQELRTTGASRRSLESNRVQLVRRQSELGRALIEQHIAATI
Ga0307278_10000001323	F072313	N/A	MRVGAPDELSAVLLADRLGRDRCRIGQQSDDSWYLEFSRPPTPGPAAELLAEVRRWLAEERITQTIVWIGEQPFAVSG