NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302278_10020249

Scaffold Ga0302278_10020249


Overview

Basic Information
Taxon OID3300028866 Open in IMG/M
Scaffold IDGa0302278_10020249 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4945
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025900Metagenome199N
F056263Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0302278_100202492F025900AGGAGVPVSRTRKPSKKKNSLAPSSKEARQKIRRWSFVVEVTRGDTVKTFQPPALTIGNMTSARAAADTILNDIASLDQFKDCKVVVNPKAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKQDTSCPCHQIEDEAARQVEFDRHVTELLGKYVMEEQQATRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEESPAEQVNTDPFPDGEFGKEAA
Ga0302278_100202493F056263AGGAGMSAITVDEASTPWLQRAGLKLRSWQGTGMSTFNAWRQHRDQESLEKALARIIETANGHRAKGLPKGSPAYFALRDKATAKINTFCKKWNVDPTIIEAEAPALREMYALTIPDKQAPAGIKMFAAFLGGILSLILIGAASGLVNAGHNWVMHLFAHVIH
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