Scaffold Ga0302215_10081233

Overview

Basic Information

• Taxon OID: 3300028864
• Scaffold ID: Ga0302215_10081233
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1423
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029738	Metagenome	187	Y
F087142	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302215_100812332	F087142	N/A	MTEFQFLENLEFYQRRFEMLHQRIIRDMSLYIRKNQVHDSVFFKTILKFSVNITLTAAWIKLLKDFNADKYTHILRFSPEFNSTNGVPGAKINPSGNGNNK
Ga0302215_100812333	F029738	N/A	MSQYRNDPRMITAKFSSNCSKCKTKLVKGTSIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYHGTGNPYAC