Scaffold Ga0302215_10003268

Overview

Basic Information

• Taxon OID: 3300028864
• Scaffold ID: Ga0302215_10003268
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10954
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044910	Metagenome	153	Y
F054439	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302215_100032681	F054439	N/A	MFTKKNGSTLKQTAYARRIFGAQGTTKKEIALDVGYSANVSNSIVSHIESKPGFNNAMTQLAIDSNNLALAAMSEFKARSFKDFSNKDLIGALNAIGNAWSKFNIIPKEGGSNQPVNKLRTVILQQIENQTVYPDRENIPIEKPTVVEGILEEEKELDF
Ga0302215_1000326812	F044910	N/A	MLQDAHSKKISAAVTAPVGTTIIVAEQPEAYIYIHELIGDLSAAGNLIIRCGARIVASFTLDAGQGITEQDEPGMDGVPRFECRPGEDFILEVTGGTFNGAIDYSFRY