Scaffold Ga0247610_10700394

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247610_10700394

Scaffold Ga0247610_10700394

Overview

Basic Information
Taxon OID	3300028833 Open in IMG/M
Scaffold ID	Ga0247610_10700394 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1048
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	New Zealand: Palmerston North, Manawatu-Wanganui
Coordinates	Lat. (^o)	-40.3794	Long. (^o)	175.6106	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013263	Metagenome	272	Y
F088017	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247610_107003941	F013263	N/A	LKQCGIECRDNKQSKKMKANNLKELRELRNQEKAIKARIDEISTEATNEAMAILAAKGQEKGEFEVEGVGKFQLQRTEVFDFADYRRYPQEQAVKWRENAKEKLKEQNLVKARTAVMAGYVKTFVELYPDKEPDEVKLTVKVVE
Ga0247610_107003942	F088017	AGAAG	MKTSFEIIWEFLAPAEQFLNRREACERLWKGLPLKKQRQIYATFVWQKAQGVEIEENPYFAISHCKPKPFNYNGANVSLPNDTKLFIAKYGEHYGVYSKLDTEAFEMEDRREFN

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