NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307312_10728881

Scaffold Ga0307312_10728881


Overview

Basic Information
Taxon OID3300028828 Open in IMG/M
Scaffold IDGa0307312_10728881 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)657
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017379Metagenome / Metatranscriptome241Y
F033565Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0307312_107288811F033565N/AADQRFQAALDQAIAKGRERIEAVEATVQLKRHTKLSL
Ga0307312_107288813F017379N/ASKTPFVWKAELGGAPDSAFSAQLGSVTYYAVTRSYGHPAYIEVRGARRGLKRLDLGTYVKLEQAKQACERHYRAGCDLSKAERIIR

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