Scaffold Ga0307302_10018311

Overview

Basic Information

• Taxon OID: 3300028814
• Scaffold ID: Ga0307302_10018311
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3163
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001757	Metagenome / Metatranscriptome	641	N
F003760	Metagenome / Metatranscriptome	470	Y
F075885	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307302_100183115	F001757	AGGA	MMRVLKRLQDKATTGAGKRLVLPEPRRVRFLIRGEGPVSAGAVTIECCPESTKAGKFWMELATIPVPADNGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGRPDRPDSTKVI
Ga0307302_100183116	F075885	GAG	MQQPADVVVRPAIKHVPRSVARDAHERIVRCGLGIVPVRSETEDKFEDAMEVTASSPLFELSRVLVRFNHVARFIVNANHGIM
Ga0307302_100183117	F003760	AGGAGG	MKPKQIFISILAVLFVFPLMETFAQRAANSGSIEVITTFDYPGTGN