Scaffold Ga0307302_10003948

Overview

Basic Information

• Taxon OID: 3300028814
• Scaffold ID: Ga0307302_10003948
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6568
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016829	Metagenome / Metatranscriptome	244	Y
F071581	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307302_100039484	F071581	N/A	VSNQSRILRFGITCDGKRSSYWRVRAGMAKPELFLEHEGFGKVWHISLHVSGEWHMVTRRKERATWDRPGELFPGYTRAVGIVQPVAVAHREGPAPADVQLVSVAPDADPTTFSLFIERPGANQATWPGKNAEGTTFVGRIPLAADAGTCCVVALQHPLEPGKVELPRPNDDELRQMRNWTANGVLVTTVVGELSDGAIGLIDLRADPSVVATIDSALGS
Ga0307302_100039487	F016829	GGAGG	VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEAGTILVVAPAALLHPRVPQPEGSWVYGLLTGHPEREAGELVFVADLTGELRAWPHDTWAKLGVDPDQVAQAVIGCWRDGEVSGLQVDDLSFEEARSLTRPVMTYVRGQLRGRLTARLGRVHRRWLHPTSGRRPDDRFL