NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302157_10150808

Scaffold Ga0302157_10150808


Overview

Basic Information
Taxon OID3300028813 Open in IMG/M
Scaffold IDGa0302157_10150808 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1383
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046491Metagenome / Metatranscriptome151Y
F046780Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0302157_101508081F046780N/AMINPKTILAEWVTALQALPNLVAALGGDPTKIQFYSENITVFGQPTQANVRLAILTMPPGSIMIVWNGTGEGRLGNAQVFRHEFALYLRTPEAPNVGYEDLWTWIVNDIPEG
Ga0302157_101508082F046491N/AMPDWPTTSANLNRSMQNAFGEPVLYQAMQAGAAVGAPATITVIRKLRERMEAGPVASVEEIEVNPVDLPNPPQRGDSVAAWGAQFTVTTVRQPDPYGMIHVTLTLAPQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.