NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302157_10002344

Scaffold Ga0302157_10002344


Overview

Basic Information
Taxon OID3300028813 Open in IMG/M
Scaffold IDGa0302157_10002344 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22103
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (64.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094675Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0302157_1000234424F094675GGAGGVGTKRPVGGTMEQFDETWEDGAPEADIELNSDPEELWRSLIADEEYPRYWSESVWSRHAEDVSESGSLLFTDREAETELTDELRLSELWGRCEIGCLAMDEFFELSALITQVQALPGSLCLDCDMLGRPNASANWALATTTLCRSHLRFRLGYARIDGGRGR

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