Scaffold Ga0247824_10539344

Overview

Basic Information

• Taxon OID: 3300028809
• Scaffold ID: Ga0247824_10539344
• Source Dataset Name: Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 693
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.673
  • Long. (^o): -77.032
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049538	Metagenome / Metatranscriptome	146	Y
F065515	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247824_105393442	F049538	GAGG	MRNLFVLLAVLGLAGIVLGVLNILQGAAGLHGIPFQFENYGGPGSIIAGLIMVVVSLYLRSAWPDRP
Ga0247824_105393443	F065515	GGA	MPLLQTVLDALKQIRAHHRRRLPFLAPALERRRPRIQMEDYAARHSIEHTLDRKAELRRLVPFRGDAAARYHQLLIFELTGLK