NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247608_10000046

Scaffold Ga0247608_10000046


Overview

Basic Information
Taxon OID3300028805 Open in IMG/M
Scaffold IDGa0247608_10000046 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)241681
Total Scaffold Genes314 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (28.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027710Metagenome / Metatranscriptome193Y
F028722Metagenome / Metatranscriptome190Y
F057815Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0247608_10000046177F057815N/AMAKKIKDSDILKAMAMHLDEDSVVFGANGHYAVGAYYDITKVSSVFGDKDYNSESNLESASATTAAEKYYTDNNEMLETFQKAIWLKNW
Ga0247608_100000462F027710N/AMEKKKNKLYVLVDKSLRPVYGCVQGGHAVAQWLLEHPCQTWDNQYLIYLSADVRKWKMRLNALDIDYSEFNEPDLDNKTTAIAVHGHDHVFSSLRTVTED
Ga0247608_10000046290F028722N/AMANTIPNGQTCLEKRGMEERHQEITRSDYNIENQYGATHKDATSDGDAQGKGTGHGGHTHFLPDCTKPTNMINYSNFDTENGGGCYDIKGRNGISGRERALAISMYNKENPYGANLVDTSANVADGQYYVGQQLGSPNSNCG
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