Scaffold Ga0307503_10003307

Overview

Basic Information

• Taxon OID: 3300028802
• Scaffold ID: Ga0307503_10003307
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4019
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006907	Metagenome / Metatranscriptome	362	Y
F023751	Metagenome / Metatranscriptome	209	Y
F024896	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307503_100033072	F024896	GAGG	MKKVLPFVLAALIIPGVALAKPNPNKGTHTNHGKAKVMYVLRGMIYAYTPYDSTTSTPGSITIDVKHSNRHGRLLVGQTITISTGANTKIRLLNGVTSIAAAQPGDIGKVKVRASRLAHKSATLADVQNALLNQPAHMVTDWGPAS
Ga0307503_100033077	F006907	GGAG	MFRYGLHLPDGDDLGEATYAQMIKPGEEIIAGKNEHFRVVAIVPFEEEDESPFVGLLRVEVA
Ga0307503_100033079	F023751	GAG	MSTPATDAPKLRPPPARLARQRDGTRINGITTRRILYWLAAAVAVLAVGTIIGLIWADTSDAAGLFAVVTNIVGAAGIVVLLIALAVVTRRQRRLH