Scaffold Ga0307503_10000106

Overview

Basic Information

• Taxon OID: 3300028802
• Scaffold ID: Ga0307503_10000106
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44176
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (95.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041752	Metagenome / Metatranscriptome	159	Y
F060877	Metagenome / Metatranscriptome	132	Y
F068279	Metagenome	125	Y
F080575	Metagenome	115	Y
F083401	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307503_1000010613	F068279	GGA	MTGFLSDKCTEIRGWLAIGSDVYPDPVVTSWIRMAEEQLSNVLRVKHMIQIDTCTLIQDRVRLPLDWQEIRFARITPGGATLRYNTPDDFYNPEWSDTPASPFNSRKKRYTVLGNYMIVGEVTPTPGLAVELTYYQDIPPLTDDVNNWINVYHTSVYTLKILHIASLYAIEDERGTIWDKEVTRAVVLMNDAHKIDRASGSVLMQVRRKTFG
Ga0307503_1000010614	F083401	AGG	MAERKVTYRDDGAIKRTAVWEDDDPLTVHIYTEQDMTQVVENNKVMRELHPQRSTNKLLARGVPVSVAERSFREQWDAKDWAKWLDDPDNAAFRIWPGRVGK
Ga0307503_1000010626	F060877	GGAG	MEDHNQEVQIDAEVAEDNAKRNSCVQVAYKTRYAERAVAAGTKRKAAQRSCWDWLAQTIAGECLVGKDRIDIDKFRALLVANGLEEKPWWNTRTKGWEGRFRMSGRLALQRVVAEAGVLLTTDGDELVPPTEWVAKHTH
Ga0307503_1000010649	F041752	AGGAG	MSNEQTAAPTEPKVTKSIVPSKYSGRYKNGGEDALAQFIKSQCTDKEGFNFDDFFMLCEKNGLPPEKVEHYKGQVSERRHGAEGRARMTLRNMLATIVRKEGKAIGLDGQEYEVSLPKPALTGAAKEAAEAKANAA
Ga0307503_1000010658	F080575	GAGG	MPYRPGDPTREVEARIEVTTAKAYLIEPTMGRVAQTWLPKSQVVGMTEADENGLRTFTVTEWWYDRAELSDD