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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028802 Open in IMG/M |
| Scaffold ID | Ga0307503_10000104 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44517 |
| Total Scaffold Genes | 62 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (93.55%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Washington | |||||||
| Coordinates | Lat. (o) | 46.6992 | Long. (o) | -120.899 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017849 | Metagenome | 238 | Y |
| F068279 | Metagenome | 125 | Y |
| F080575 | Metagenome | 115 | Y |
| F083401 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307503_1000010430 | F083401 | AGG | MAEIKRVYRDDGAIKRTMIWEDDAPETVHVYTEQDLTQALENNKIMRELHPRRSTNKLLARGVPVSVYEKSVLENWDDGDWAKWLDDPDNRAFRIWQGRVGR |
| Ga0307503_1000010431 | F068279 | GGTGG | MGTFLTDKCTEIRGWLAIGEDVYPDAVVTGWIRMAEEYLSTALRVKHMIQIDTSVLSLGKALLPLDWQEIRLIRYLPEGGLLRYQTPDQFFNPEFDDPPTLPYDSRHRRYCILGNHIVVGDISVDEPLQLELAYYQNIPPLTNDANNWPNVYALTVYTLKILHIASLYAIEDQRSAVWDQEVVRMVNAMNTQHKIDMASGSVLVQTRRKTFG |
| Ga0307503_1000010435 | F017849 | GGAG | MVEEAKSWFKENSTLIYFLIAQVIAIGAFAASGLAYMVKLETRVTIMEERGAAYTVGRMDEMKLKIAVLESQIEKNEDTIARVRELLLRDFGKSITK |
| Ga0307503_1000010453 | F080575 | GGAG | MPYRDGDPTVEVEASIEVTTAKAYLIHPTMGAKKEVWLPKSQVAGMSDLTEDGMRVFTVTEWWYKQAGLDDNGS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |