Scaffold Ga0307503_10000002

Overview

Basic Information

• Taxon OID: 3300028802
• Scaffold ID: Ga0307503_10000002
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 447466
• Total Scaffold Genes: 442
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 307 (69.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005789	Metagenome / Metatranscriptome	390	Y
F009274	Metagenome / Metatranscriptome	320	Y
F032367	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307503_10000002171	F009274	GAGG	MLPAWIARRAAPAIWRRIPWKMVWTISLWLAEKGRERIKDNLDDREQSEFWNLVKKSRGRPSNLAQRDRTRMKNIVGKAIRGS
Ga0307503_10000002438	F032367	N/A	MTRKRDIKQFRQACREVGLTVQERYEASQALHVEKESAGVQAHMSYGELLTWLRQWRQR
Ga0307503_10000002439	F005789	GGAGG	MATVVALDSSPANVLRSMRGSIVDARTAYPDVLHVEVRDSVGELWRLATQDAEWSPTDPAELVGKSIEDAEIDEETGELRCQLSGGSLLDVKPAAQEADDDPPNWELITPGGVLLEFGPGVRWQISSATDPVSARR