Scaffold Ga0265338_10121366

Overview

Basic Information

• Taxon OID: 3300028800
• Scaffold ID: Ga0265338_10121366
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2082
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007490	Metagenome / Metatranscriptome	350	Y
F026140	Metagenome / Metatranscriptome	199	Y
F031965	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265338_101213661	F026140	N/A	EQHGFQLITISASNPVALRDVNSLDYLCAGRNPSGCPKPSLADGVLKQIEQREKKGIYTHILAFHELSTTTAMMPSLISSLKSRGYRFVTLSEYMKLVGSTPDQNTKPAVASARISGN
Ga0265338_101213662	F007490	N/A	MRAVAIKKGQTKERAPDFKQMGLLRCDGCGEEFVVFQDPAFVDEGSAEYQARWLEKVLAEEHERGTKHADRIQLPD
Ga0265338_101213664	F031965	N/A	GHAKRDIAEWLLPPLWPWKVIMLPARGPRPKLKGETGLSLRLMDDVQIPQVAQTYGPGWHFFGRPQRESYQPAVYDDAKPRLLVREAASASAPVAQRPQASYASYVTTDFALPANVASAPGMPIFVLTTGTVLSVSGYGYQDSRITYSLVGGGTGVISTDEVDWSTTTRVNSQRGVRVTLHGGRASQATPGL