NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265301_10400356

Scaffold Ga0265301_10400356


Overview

Basic Information
Taxon OID3300028797 Open in IMG/M
Scaffold IDGa0265301_10400356 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021678Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0265301_104003561F021678N/AHDKTSFVWTYSNKKWTPSNVVATTKLGYLCCKWNSRGDKFCEGTSAKHLFIGYYNTESNWWMGRNIKVHKSSVVCCEIDPTSLFVISGSTDLRVYISSCYIPSVDDSHLTDATKPLAQEFGTAIYEFRPNCWINSVAWNASGALGFAAGQNATISVMNYKDQKTDVIKCKHSPVTMIVPNGENSFYAVCYDRNVLEYEKKGDNWEIKKTVTSGGEKEKKTGTSGPQRGSAVSDALKKFQQMGTQKKENLAVTTKQSSHLHQSLISSLNIKGKDIITTDVSGYVKYWKL
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