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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028797 Open in IMG/M |
| Scaffold ID | Ga0265301_10010301 Open in IMG/M |
| Source Dataset Name | Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8359 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Australia: Woodstock, Queensland | |||||||
| Coordinates | Lat. (o) | -19.6574 | Long. (o) | 146.8351 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017772 | Metagenome / Metatranscriptome | 238 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0265301_100103019 | F017772 | GAGG | MKEPRLKILPPWTIVIRKFEALFDGDPQIACNCNFSGASPSIVLACNNGDKVAALQQILPEEIAFGNIKLAVAVDGTPSNRAFTSKVELFDTAFKGNPAYAYSVCPAEDGYQWIGTTYVVFKNCVVQFAADNLNDCHGIISTLYQNIADEVLTGPATDGVFYNTDVERANLGMPLGEWP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |