Scaffold Ga0265301

Basic Information
Taxon OID	3300028797 Open in IMG/M
Scaffold ID	Ga0265301_10003364 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028797 Open in IMG/M

Scaffold ID

Ga0265301_10003364 Open in IMG/M

Source Dataset Name

Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17001
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

17001

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (85.71%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	Australia: Woodstock, Queensland
Coordinates	Lat. (^o)	-19.6574	Long. (^o)	146.8351	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Australia: Woodstock, Queensland

Coordinates

Lat. (^o)

-19.6574

Long. (^o)

146.8351

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F052997	Metagenome / Metatranscriptome	141	Y
F084920	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265301_100033642	F084920	AGGAG	MDNEFGLQELYSVQLKSTYPIEIKGKQIAAGEVIAAFDKIQISNFQEIHKEVAAQGGYYNRKLVVWNRTEGVNLIFTQGIFSKTQLALMSNTKLIRVGQNQVVRIAQRDELETDSEGKITLTHVPIDSWIFVYNKKTGEKLTGIGWPDHTKPILETPLVYKDVIVDYEYGYDNGADVSFIGEDIFEGYVTLEGRTRIKDDITGETHTAIIYIPKLKITSAFNLTLGQNAQPMVGKFNGTALPVGSEKNLRALEIYFLDEDIDRDSEWR
Ga0265301_100033645	F041054	AGGAGG	MNVRNCSDIGVNAQYIIKRLLANQNLLKLLYYTDKDPLSHEDLSEEQIQNEVFEKLVKIVPRVGPKETAHSIIAVRIARARGLATNNEFKNVNISVEIFVPMTQWVIKDTNLRPFAIMGEIQKSLNGKKIEGLGKMVGGDFDLNFLTEEISAYEQTFVLTSYD
Ga0265301_100033646	F052997	GGAGG	MGYYEEVYLKRLNRYGVDFQSRMQGQREENFHRQLMKSVYYVEFEYEGIMREGELTPMRQNETKTMQYLLTDVHLDMPNGTILFIPDKDYELRPWLIYYLEDMKASGYNRYIMLKMTHMLTWKDRDGNIQSSWAYFYGQEDNMLKDELKSRSRSKVLYTENLKLSFFILPVNEFLRKDDYLEVGEGRLKEAYVVTGYDIQSTPGVEFVSVDPQYIRDLTPPPEQTPSDEVSDFFWINQGADKEVEEVDEP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0265301_10003364

Overview

Ecosystem & Geography

Associated Families

Sequences