Scaffold Ga0265301_10001769

Overview

Basic Information

• Taxon OID: 3300028797
• Scaffold ID: Ga0265301_10001769
• Source Dataset Name: Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27021
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (93.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Australia: Woodstock, Queensland
• Coordinates
  • Lat. (^o): -19.6574
  • Long. (^o): 146.8351

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F086398	Metagenome / Metatranscriptome	110	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265301_100017691	F012184	AGGAGG	MNKNDVLSTILSMPGAQMCRANKTNFVAIPTEEGYVKVTIGVALAEDTKNHKAFNFEAATAEYKAHEAESALKAAERANKPVKVKGPNPEAEARRQELDTKVSALPSFTDYTATDIMNALAGQLADNVTVMAVGSSAMRLVEKGILTMTIDEKKKKHYTKA
Ga0265301_1000176924	F086398	GGAGG	MNEQMTYHVAVQRANRVQHIVEEIGIGQIIKERYIGYGIGGQAGRYICLTDTGITIIKDEQKQKIITIYVTTQRELVAVFGGTKKIPPFLKKKVDRNQSKYTERGKTIWKS
Ga0265301_1000176928	F087968	AGAAGG	MVKITKGLAKKMYNEGHEIMVIPCKVRPTGILASWISKPDNDPDATFEKLCDAVFYYNCSPETGMSLTYYAKEV