NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265301_10001358

Scaffold Ga0265301_10001358


Overview

Basic Information
Taxon OID3300028797 Open in IMG/M
Scaffold IDGa0265301_10001358 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32401
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (84.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265301_1000135811F087968GAGGMVKITKGMARKLYNEGAEIMVIPDRVRPTGILASWTSKPADDPDADFDKLCNAIFYYNCSPETGMKLAFYAKEV
Ga0265301_1000135824F012184AGGAGMTKNEILNTILSMTGAQMARANKTNFVIVPTEDEGVIKVNLTTALAMDTKNHKAFNADAAVAEYKAWEAEKALREAERANKPVKEKGVNVEAQARRDALDTAITGLASFTDCTATDILNALTGVVPENTTVMAIGSSAMRLVDKGVLTMTMDEKKKKHYSKV
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