Scaffold Ga0307515_10196292

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10196292
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1909
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000814	Metagenome	880	Y
F016902	Metagenome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_101962921	F016902	N/A	MIFGTTGTQFSSKGLSVSCSLFAQKMSASAVELGFMDDFLGPGVLVFVNGF
Ga0307515_101962922	F000814	AGTAG	LKISTSGVELGFEDHFWDNRDSVFIKGLSVRSSLFAQKMSASTIELGFLDDFLGPGVLVFVNGF
Ga0307515_101962923	F016902	GAGG	LGLRGLVFINGLSVRISLFPQKMSASAVQLGFLDDFLGPRVLVFVNVF
Ga0307515_101962924	F016902	GAGG	LGHRGLVFINGLSVSNSLFPLMMSASGVQLGFLDDFLGPRVLVFINGF
Ga0307515_101962925	F000814	N/A	ELGFEDHFWDNRDSVFIKGLSVRSSLFAQKMSASTIELGFLDNFLGPGVLVFVNGF