Scaffold Ga0307515_10047201

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10047201
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6555
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008227	Metagenome	336	Y
F019765	Metagenome	227	Y
F079414	Metagenome	115	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1004720110	F088003	GGA	MVDKGICPHSPEIEHHDVACSGIFADEFAEKHPSEWTKQASTTLEEATEAYMVEVTAEFH
Ga0307515_100472015	F079414	GGGGG	MDLYQSSLPAVFAAIPLLYTIAYSPLEILLESLVESLLESRLECLHESLLERASHRKE
Ga0307515_100472018	F019765	GAG	MLQVMDNMEASCVFYVKVGTFTHLEQSKISLLTVNKSGIVTLTVQHDMIVTVIFM
Ga0307515_100472019	F008227	N/A	MDTQPPPPGESGSNTGRLAGAASNTDILGTQQERRHKFVHRDAANAATKHMTQDAHLKIVRKTGSRKNKKQHAVGCEYIHIEAKGGQLTV