Scaffold Ga0307515

Basic Information
Taxon OID	3300028794 Open in IMG/M
Scaffold ID	Ga0307515_10038992 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7574
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

7574

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (64.71%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6992	Long. (^o)	-120.899	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6992

Long. (^o)

-120.899

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000814	Metagenome	880	Y
F016902	Metagenome	243	Y
F027698	Metagenome	193	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1003899210	F027698	GAGG	VCRLKISASAVELGFEDDFWDGRDSVFINGLSVMSILFAQKMSASDVELGFLDNFWVPGTSFSSTVSEQAVVYVH
Ga0307515_1003899213	F000814	N/A	VSAVELGFEDEFLDTRDSFFVNGLSVRSSLFAQKMLASTIKLGFLDDFLGPGVLLFINGL
Ga0307515_1003899216	F000814	AGTAG	VKISASAVELVFEDDFWDSRDSVFIKGLSVRSSLFPQKMLASVVQLGFLDDFLGPRVLVFVNGF
Ga0307515_1003899217	F016902	N/A	VFINGLSVRSSLFAQKMLASTIKLGFLDDFLGPGVLLFINGF
Ga0307515_100389924	F027698	N/A	LKISASTVELRFEDEFWDTRDSFFVNGLSARSSLFGQKMSVSDVELGFLDDFWVRGTSFSSMVSEGAVVCVD
Ga0307515_100389925	F027698	AGTAG	LKISASTVDLPFEDEFWDTRESFFVNCLSVRSSLLGQKMSASDVELGFLDDFWVSGTSFSSTVSELAVVYVH
Ga0307515_100389926	F027698	N/A	LKISASTVELRFEDEFWDTKESFFVNGLSVRSSLLGQKMSASDVELGFLDVFWVSGTSFSSTVSELAVVYVH
Ga0307515_100389927	F027698	GAGG	VCRLKISASAVELGFEDDFWDRRDSVFINGLSVMGILFAQKMSASAVEVGFLDDFWVPGTSFSSTVSEPALVYVH
Ga0307515_100389928	F027698	AGTAG	LKISASAIELGFEDDFWDDRDSFFVNGLSVRSSLFAQKMSASDVELGFLDDFWFLRTSFSSTVYEAAVVYVH
Ga0307515_100389929	F027698	AGTAG	LKISASTVELRFEDEFWDTRDSFFVNGLSVRSSLFGQKMSASDVELGFLDDFWVRGTSFSSMVSEAAVVGVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307515_10038992

Overview

Ecosystem & Geography

Associated Families

Sequences