Scaffold Ga0307515_10015902

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10015902
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13822
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F038958	Metagenome	164	Y
F081952	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100159021	F004778	GGCGG	LHGITADNASSNYSLTRELQSTLEASGIEWRVLRNHIPCMAHVIQLGLGAFMSSLSVKGRSKSWETHEGDHQIGEKESVDIGKSQRLRNGGNARINMVSAMRPGLAKIIEKLHTSAKCILVSGRLQECLRGCGV
Ga0307515_100159023	F038958	N/A	MDSLSSDVHPSRAEPTLFRDGDCFIIASTVSADSLQQMLLRVVADGSARSLRNALFDHRSSRFDIAFHGM
Ga0307515_100159026	F081952	AGG	MVNSLKKNLLPLPAGKYGKSTKTSTRQRHQANKGQSGLEAEWVRGLGALRSLRSEKKLSAEKPRETYCLHNQGKEKWIEDYVDRETTVAGK