Scaffold Ga0307515_10014350

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10014350
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14703
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F010438	Metagenome	303	Y
F046750	Metagenome	150	Y
F059517	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100143502	F004891	GGAG	MIARASGSGMGVGGFSRPRRGVGVITMPDAGLDTTRRVEVLPGAGVLRLLVPGVAVGVFVDRRCVVDGVEVTR
Ga0307515_100143503	F010438	GGAG	MWNRRPFMSASDLETVSNATRRVSKALAEGPHWQIIEIYWNTAMQQNNIWSIAFEARTKEILKEVC
Ga0307515_100143504	F046750	GGA	MIDDKDGHIPSPLIMFTCTALRHALLEWQKNKVVHPKASKSKLKADRPDRSNYFNFKNDGGKIASCCAVMGRKLLTPPRVADTYTFLMNTWNTLPESYQQRVYNNTLATVKCQIQQAENPTPAVVISVEAEPVDNAILLDYLTSEVALEEPEIGSTDPNIPIDNNCTDDELHFGMPGGSGDFEDEGDESDVIPTASRRRRAATELERFDLGTSHVDGYECEDGDDAHAVEEEEASQADDGSTQNVED
Ga0307515_100143506	F059517	N/A	MYKGDLERGMPKQWPTFDITCSNWNQVRAQVDKVKSHFIQLARDHIAEHYDLHHGESDAEHLEFTDSLLVDNQYLLPVAECVEGGVCRPTETQQVSKAADE