Scaffold Ga0307515_10012431

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10012431
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16014
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Cantharellaceae → Cantharellus → Cantharellus anzutake (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024230	Metagenome / Metatranscriptome	206	Y
F058588	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1001243112	F024230	GAG	LIIPVFRFPERNKVPDFSTFSSLLRITAKYELPTVRSQLLEVIHDAFPDTFEGLAPSKSLGEGVFSGPTPHPNAVLNLFVQQKLTSALPMAYYMASRRGLDSLMDRRLPQNAILSPEILQSAIRGFVTLREMELKETHRLIFGSGTPRRCSSLECPSLRVGGPRASEAHQKIIDQVTDSSQPGTKVLQVLSLADIFGGDCYGFCESCVEGWEADHGEVRKKVWNALPGVFGLKG
Ga0307515_1001243115	F058588	GGA	MDFSTFSSLFSVSANYEMPKIRARLLETIRDAYPEKFEGLEPSKPLGESVFDGPRPHPNSVLNLFVQQKVTLALPMAYYMAARRGLDSLMNTRLPLSATLSGQTLRSAMHGLMELREMELKETHRIIFTIKNASNRVGCSSKDCPSRRFKGPLDAEIIGVHQRAFDRITESADGGTRILQVLSVSEFAEDTGTKFCQVCVEKIQAAHAEVRRKAWAALPRVFGLKA
Ga0307515_1001243116	F024230	N/A	MFDQTSLSSAESPGGCPHISSSDTAADFATLLKMIYLPGYVALSPCRRNVLLIIHVFRFPERNKVPDFSTFSSLLRITAKYELPTVRSQLLEVIHDAYPETFEGLAPSKSLGEGIFSGPTPHPNAVLNLFIQQNLTSALPMAYYMASRRGLDSLMDRRLPQNAILSPEILQSAIRGFVTLREMELKETHCLIFGSGTPRRCSSLKCPSLRVGGPRASEAHQKIVDQVTDSSQSGTKILQVLSLGDICGDDCCGFCESCVEGWDADHAEVRKKVWNALPGVFGLKG
Ga0307515_1001243119	F058588	N/A	MPEIRARSLETIRDAYPEKFEGLNPSKTLGEDVFDGPRPHPNSVLNLFVQQKVTFALPMAYYMAARRGLDSLMDTRLPLSATLSGQTLRSAMHGLMTLREMELKETHRIVFTIKDAPNHAGCSSTDCPSRRFEGPLDAEITGAHQRAFNRITDSADGGTRILQVLSASEFAEDTGTKFCQVCVEKIQAAHAEVRRKAWAALPEVFGLKA