Scaffold Ga0307515_10010703

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10010703
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17529
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (48.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F019765	Metagenome	227	Y
F026456	Metagenome	197	Y
F036505	Metagenome	169	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100107031	F019765	GAG	MLQVMDNMEVSCVFYVKVSTFTHLEQSKIALLTVNESGIMTLTIQHDIIVSVSFM
Ga0307515_1001070312	F089625	N/A	MTQLGFATGLSLNRAESQMVQSNQDENNYGWQQLLNGQCIKMSVNGASTICGLVSTVIH
Ga0307515_1001070323	F036505	N/A	MAHVIQLSLGAFMSSLGVKGNTKSWEAHERDQQFGENESTDIGKSQRLRKEGNARINKLSAMRPGLAKIIEKVCISTYYESAETDLHIAENAC
Ga0307515_1001070324	F026456	N/A	LAKKKTQWKEDLFFTVKCVPQKLSKYYTEVTPTTGMLLVTAHILDPIRKLWSFRKRDKGMDIIPEDETSYTTQYQEAFLKYVENK
Ga0307515_100107039	F004778	N/A	VLDRFELTDGRLLGITTHNAFSNYSMTRELQSTLQASGIEWPALRNHIPCMAHVIQLALGAFMSSLGVKGRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARINKVLAMRPGLAKIIEKVRIS