Scaffold Ga0307515_10010656

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10010656
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17575
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F002555	Metagenome	548	Y
F014479	Metagenome / Metatranscriptome	262	Y
F102221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100106562	F002555	N/A	MDIIPLVNNLEIFRIFKDEDREEGDGVTDALSTILRLLGEKLKEAS
Ga0307515_100106564	F014479	N/A	VGLEGFRLLSSSIITVIEGVCVFLSGDRRCARVFELLEHLGIGARSAVLPRGLYCCNLSLLEGPSCLCATAFYEVSIEFPFRLLRDFKGR
Ga0307515_100106566	F102221	GAG	MSGIARVLKVVSPLFKAVDYSQQFLIIGIIPNFRSLEFSAIKYY
Ga0307515_100106567	F000247	AGG	VHTYIIHIALNYKRTPHTEVARTSYLTSSLNTSVGKTLVPSSSIPFTYPSIDRKLYYTGGLSLNRSIGPTSISL