Scaffold Ga0307515_10006634

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10006634
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23070
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007161	Metagenome	356	Y
F016500	Metagenome	246	Y
F027375	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100066342	F016500	N/A	MDKLVVKVIKAKEGLDSFYYIRGLLVIDYLYLLRVNLNSFYSYNKPKVFYTFYPKLAFLNINL
Ga0307515_100066343	F007161	N/A	MLYYLINRYKLDRGVVLKLSLKVPLGVLSSLTKEVEHFSFFRKEIVIINAELSLYLNPLILKGRVYPIR
Ga0307515_100066344	F027375	N/A	MIPLNVLNKSYYSKNRSTNSAAIIVIIIAKYPKNFIYLLTITKIVLATSPVLILVRGKPIIKSIINSNIGPYGIGSTNNSLYR