Scaffold Ga0307515_10006544

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10006544
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23293
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F038018	Metagenome / Metatranscriptome	166	Y
F063295	Metagenome / Metatranscriptome	129	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000654418	F063295	AGG	MCRCTGSQSWHGGDQRNDWVGVKQRPGRCYGVLTGRLPWQLQPLYKIKLPYEDGAFIEYWLALVLTTIPENSGNLDPVSKIVNGSKALAAVALQDLGVANFVSCAHVIPEIATSSMSGEGRNKQWIVNSHIDLAMWNDVYN
Ga0307515_100065442	F081959	GGA	MSTGMRGMIVMIRTRIRRKKQGKLMMDQRRMWRTEGIVLESVMIRLYISDL
Ga0307515_1000654437	F038018	GGAGG	VSQTREHLFRHCSRWKDQQKTLWKTVGQATGRKAGRCQHVQISELFTIEEGDQAVMDFLAATEVRKFPPK
Ga0307515_100065447	F004891	AGTAG	MIARASGFRITVGRFSRPLRRVGVLAIPDAGLDTTRRVESVCVVPLGAGVLRLLVPGVAVGVIIDSLSVADWVEITRCVISAT