Scaffold Ga0307515_10006023

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10006023
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24404
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F004663	Metagenome	428	Y
F029000	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100060233	F004663	AGG	VDRLRRDYLGTTRKFKECYKKGIGVLEENRLGNINKEKLLKNELPKGDLGRATAKLLRVVPFIGRKLVLLLLSSYRPYSTSFYSLKHTFL
Ga0307515_100060234	F029000	N/A	MQYIIPIDLINIILVAKYFIKYVFKLHGLPNLIIFNCGS
Ga0307515_100060235	F000746	N/A	MVAGVGNTVEGIINDYKIKVEVLIEVYFEVIARKSATFVRNRIAS