Scaffold Ga0307515_10005646

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10005646
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25266
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039539	Metagenome	163	Y
F054477	Metagenome	139	Y
F060493	Metagenome	132	Y
F080892	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100056461	F060493	N/A	MRRGFIVLMLSLDISSAYNNVPYKRLLYILRVKGFLE
Ga0307515_100056462	F054477	N/A	VSAFLGVKAKANKSNSPGIDWRYRLGIGIGLFFGFNIVASKGYYLTIVGSLEV
Ga0307515_100056464	F039539	N/A	MKLYGLLPLDFKKFIKLKKGLTNEELRKLLPKRYHNFTNIYL
Ga0307515_100056467	F060493	N/A	MRKDFIVLILSLDISSAYNNVPHKRLLYILRVKGFLE
Ga0307515_100056468	F080892	AGAAG	MLVVNIIEDLLLLAASTYINPLDIEILVINIVKDLLLLVASTYKDPLVLAQITYT