Scaffold Ga0307515_10005247

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10005247
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26330
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F003457	Metagenome	485	Y
F006298	Metagenome	376	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000524717	F003457	N/A	MAGLVCFLSTKAFLILAIVIVKIICLGFLVSCANGVALIMRIFRVLSSLGLLVVSYLGLGSVLGTELVLDLGSGSLRILFMVEY
Ga0307515_1000524719	F000746	N/A	MIITRLIKYMVAVVGNIKEGIINVNYKATMEVLIEVHFKVIVRRSAIFIRSQITS
Ga0307515_1000524720	F006298	GAG	LVIKNSNGLYTIYLTIFSEVLIRRVVLNFHIYKELFGLINLTLKIFYAFILDQEALKVGHSNLTIFNVSYTLAELIIYLFSLIKGVSS