NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10004591

Scaffold Ga0307515_10004591


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10004591 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28413
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (64.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F081959Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000459124F004891GGAMIVRDSGFGMVVGRLSRPLREVGVLAMPDAGLDTMQRVESVCMVPLGAGVLPLLVAGVAVRVIIDHRCVSDGVEVTH
Ga0307515_1000459125F006048GGAGMVNPRPSVDITCSNWYQVRTQGENVISHFIQSARDIIAELYDLHHLESAAEHLEFIDSLLPDNKYLFPVVECVEGGECGPNPTQRKSTADNEWLASTMHPGGSNPAVYLHHILSSGE
Ga0307515_1000459127F081959GAGMSTGMRAIMVTMRMCMRRKKHPKTMMDRRRMWRTEGIVCESVKIRLYISDP
Ga0307515_1000459138F081959GGAMSTGKRARMATMWMWMRRKKHCKPMMDPRRMWRTECIGLDSVKIGLYITDL
Ga0307515_1000459141F006048AGGAMLNQRPTVDMTRSNRYQVRAQVDKVKSYFIQSVMDNIAEFYDLHRFEYAAERLEFNDSLLADNKYLFPVAEHVEGGVRGPNPMQRESKADNEWLASTLLPGRGNHAVFLHQILSSGE
Ga0307515_1000459142F004891GGAMIARASGFGMGVGRVSRPLRGVGVLALPDAVLDTTQSVESVCMVPLGAGVLRLHVPGVVVGVIIDRRCVVDGVEATR
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