Scaffold Ga0307515_10004368

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10004368
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29310
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (63.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028370	Metagenome	191	Y
F038522	Metagenome	165	Y
F053749	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000436819	F053749	AGGA	VEEDPGKDRLDLESQLLEGLQSRRDPCIHSVRGVSSDSLEIAPRYRGDAIFVEEKGIDEESACL
Ga0307515_1000436829	F028370	N/A	VLCVNGKVEKSEQFHLLTFREISGRRMKELGSGSFIEIVVLDVD
Ga0307515_100043689	F038522	GAGG	MQIREIIEHKYSSSHQISTAIIREEEREFLYPFLQIKRETPEFQEPIQD